tsv2sam
Format
cg tsv2sam ?infile? ?outfile?
Summary
Converts data in tab-separated format (tsv)
format to sam,bam or cram format.
Arguments
- infile
- file to be converted, if not given (or -), uses stdin. File
may be compressed.
- outfile
- write results to outfile, if not given, uses stdout
Options
- -outformat sam/bam/cram
- sets the desired output format (when the filename does not
have one of the supported extensions, our when streaming to stdout)
- -refseq file
- reference sequence (needed when making cram files)
- -threads integer
- number of threads used
Category
Format Conversion