tsv2gtf
Format
cg tsv2gtf ?infile? ?outfile?
Summary
Converts data in tab-separated format (tsv)
format to gtf format.
Arguments
- infile
- file to be converted, if not given (or -), uses stdin. File
may be compressed.
- outfile
- write results to outfile, if not given, uses stdout
Options
- -upstream integer
- Add upstream info in gtf (integer gives size)
- -nocds 0/1
- do not include cds info in output (default 0, so do include
it)
- -genecol fieldname
- specify which column (fielname) in the tsv will be used to
name the genes in the gtf
- -addgene 0/1
- Add gene information lines (1) or not (0) in the gtf output
(default 0)
Category
Format Conversion