tsv2fasta
Format
cg tsv2fasta ?infile? ?outfile?
Summary
Converts data in tab-separated format (tsv)
format to fasta format.
Arguments
- infile
- file to be converted, if not given (or -), uses stdin. File
may be compressed.
- outfile
- write results to outfile, if not given, uses stdout
Options
- -idfield fieldname
- field in the tsv to use for the id line in the fasta file
(default: will look for fields: id, qname, name)
- -sequencefield fieldname
- field in the tsv that contains the sequence (default: will
look for fields: sequence, seq)
Category
Format Conversion