tsv210x
Format
cg tsv210x ?infile? ?outfile?
Summary
Converts data in tab-separated format (tsv)
format to the 10x format.
Arguments
- infile
- file to be converted, if not given (or -), uses stdin. File
may be compressed.
- outfile
- write results to outfile, if not given, uses stdout
Options
- -featurefields string (-genefields)
- fieldnames to be used to extract gene information (default
uses all of geneid,gene_id,gene which are present)
- -cellbarcodefield string
- fieldname of column to be used to extract cellbarcodes from
(default uses first of cell,cellbarcode,barcode present)
- -countfield string
- fieldname of column to be used to extract counts from
(default uses first icount,count present)
- -round 0/1
- 0 takes counts as is, 1 rounds to integers using the round
function except for values < 1 (v < 0.01 become 0, higher but
< 1 become 1)
- -remdups 0/1
- remove duplicate lines (1 default) or not (0)
Category
Format Conversion