liftchain2tsv
Format
cg liftchain2tsv chainfile outputfile
Summary
Converts data in UCSC chain file format (for liftOver) to a tsv
(tab separated) format to be used in e.g. cg liftregion.
Arguments
- chainfile
- UCSC chain file as used in liftOver
- outputfile
- name of tsv file to be created, will contain corresponding
regions in the to reference genomes
Category
Conversion