index
Format
cg index ?options? tsvfile
Summary
make indices for a tsv file
Description
This command creates a directory with indices that may speed up
some functionality. It is mainly used (and needed) for providing fast
access to the file in cg viz. The optional column indices will speed
up some queries, but can take a significant amount of disc space
Arguments
- tsvfile
- file to index
Options
- -refdir filename
- filename of a directory that contains the reference databases
(genome sequence, annotion, etc.) for the build the file is based
on
- -colinfo
- gather information on content of all columns, and save this
into the index directory
- -db 'databasename tablename'
- -cols
- Add extra column indices
Category
tsv