homwes

Format

cg homwes_compare resultfile refhomwesfile ?homwesfile ...?

Summary

finds regions of homozygosity based on a variant file

Description

This command will create a multireg file (resultfile) comparing all homwes region files given. A file resultfile.summary.tsv will also be created with summary information about the files and comparison data with the first file (refhomwesfile)

Arguments

resultfile: multireg file that will compare the given regions.
refhomwesfile: resultfile with regions from a cg homwes analysis for one individual sample (not the multireg file), to be used as the reference
homwesfile: resultfile with regions from a cg homwes analysis for one individual sample (not the multireg file), to be used added

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homwes

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