Gtf2tsv
Format
cg gtf2tsv ?infile? ?outfile?
Summary
Converts data in gtf format to gene tsv (tab separated) format
Arguments
- infile
- file to be converted, if not given, uses stdin. File may be
compressed.
- outfile
- write results to outfile, if not given, uses stdout
Options
- -separate 0/1
- Bu default (0), a gtf file is converted to a gene tsv file
where each line contains a transcript and exons are indicated by
exonStarts and exonEnds columns containing (comma spearated) lists
of exons start and end positions If separate = 1, each line in the
original gtf file will stay on a separate line in the output
Category
Format Conversion