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gb2fasta

Format

cg gb2fasta ?options? ?genbankfile? ?fastafile?

Summary

Comverts a genbank file to a fasta file The file may contain multiple sequences. The name of the sequence (in the fasta file) is taken from one of the following fields (in order, if not empty or .): LOCUS, VERSION, ACCESSION, KEYWORDS, DEFINITION

Arguments

genbankfile

input file

fastafile

output file

Options

-clean_names 0/1

if 1 (default 1) all characters not alpha numerical or _ will be replaced with _ in the id

Category

Format Conversion