GenomeComb

download_biograph

Format

cg download_biograph resultfile diseaseid ?genefile?

Summary

download_biograph gene rank data from biograph.

Description

Creates a tab separated file with gene names and their biograph rank wrt the given diseaseid. genes in the (optional) genefile are given rank 0, genes with a known relation in biograph will get a rank 1. Larger numbers indicate an inferred relationship, smaller numbers indicating a higher rank in the prioritisation wrt the disease.

Arguments

resultfile
file to write results to
diseaseid
umls id of disease
genefile
file containing a list of genes that gets rank 0

Category

Annotation