coverage_report
Format
cg coverage_report ?options? ?regionfile? ?bamfiles?
Summary
generates coverage report for region of interest A histo file is
generated at the location of the bam file
Arguments
- regionfile
- region file: tab separated file describing region of
interest. Must contain fields: chr, begin, end & name
- bamfiles
- one or more bam files for which a coverage report should be
generated
Options
- -s
- suffix to add to histo filename - default empty
supports job options:
- -d x
- distribute subjobs of command over x processes
- -d sge
- use grid engine to distribute subjobs
- -d slurm
- use slurm to distribute subjobs
Category
Report