Extracts sequenced region data from a Complete Genomics format
file in tsv (tab separated, simple feature table) format. The command
will also sort the tsv appropriately.
Arguments
cgvarfile
Complete genomics var file to be converted. File may be
compressed.
outfile
write results to outfile
Options
-sorted 0/1
Use 1 if the CG var is already sorted (so they are not sorted
gain first)