bgzip
Format
cg bgzip ?options? file ...
Summary
Compresses files using bgzip
Description
The given files are compressed using bgzip, and the original
uncompressed files are removed (by default). Files already compressed
using another method, are recompressed using bgzip.
Options
supports options:
- -k 0/1 (--keep)
- keep the original uncompressed file if 1 (default 0)
- -t number (-threads)
- Use number of threads to do the compression
- -c number (--compressionlevel)
- number indicating compression level, where smaller numbers
indicates faster compression (default and meaningfull values
depends on method)
- -b number (--blocksize)
- number indicating the blocksize in Kb (default depends on the
method)
- -i 0/1 (--index)
- also create an index file (if applicable)
- -t number (--threads)
- use number of threads for compression (if supported by
the method)
- -o filename (--outputfile)
- The compressed file will be written to filename. If
the --keep option is not explicitely given, using -o will change
the "default" for -k to 1.
supports job options:
- -d x
- distribute subjobs of command over x processes
- -d sge
- use grid engine to distribute subjobs
- -d slurm
- use slurm to distribute subjobs
Category
Compression